training-workflow (6) 1000genomes (1) astronomy (1) bioinformatics (1) brain-imaging (1) cnn-keras (1) data-driven-decisions (1) diamond-workflow (1) example-workflow (2) freesurfer (1) genomics (1) machine-learning (4) nlp (1) optuna (1) pegasus-wms (1) pipeline (1) pytorch-cnn (1) ray-tune (1) remote-sensing (1) scientific-workflows (1) soil-moisture (1) transfer-learning (1) workflow (1)

27 Aug 2025

SOMOSPIE

SOMOSPIE (Soil Moisture Spatial Inference Engine) consists of a Jupyter Notebook and a suite of machine learning methods to process inputs of available coarse-grained soil moisture data at its native spatial resolution. Features include the selection of a geographic region of interest, prediction of missing values across the entire region of interest (i.e., gap-filling), analysis of generated fine-grained predictions, and visualization of both predictions and analyses.

data-driven-decisions  machine-learning  remote-sensing  soil-moisture 

25 Aug 2025

orcasound-workflow

Pegasus workflow for the orca github actions workflow

25 Aug 2025

montage-workflow-v3

A new Python DAX generator version of the classic Montage workflow. This workflow uses the Montage toolkit to re-project, background correct and add astronomical images into custom mosaics.

astronomy 

25 Aug 2025

lung-instance-segmentation-workflow

Instance segmentation with U-Net/Mask R-CNN workflow using Keras & Ray Tune

cnn-keras  machine-learning  ray-tune 

25 Aug 2025

1000genome-workflow

Bioinformatics workflow that identifies mutational overlaps using data from the 1000 genomes project

1000genomes  pegasus-wms  scientific-workflows 

06 Mar 2025

process-workflow

Process workflow example

 training workflow  

17 Oct 2024

diamond-workflow

Pegasus Diamond Workflow

 training workflow   diamond-workflow  example-workflow 

17 May 2024

compare-large-language-models-workflow

No description provided

01 May 2023

rosetta-pegasus

This is a Pegasus workflow for running Rosetta's De novo structure prediction on the OSG. The workflow predicts the 3-dimensional structure of a protein starting with an amino acid sequence, using the Abinitio Relax algorithm.

11 Apr 2023

freesurfer-osg-workflow

A Pegasus workflow for running FreeSurfer on the Open Science Grid

brain-imaging  freesurfer 

12 Jan 2023

hierarichal-sample-wf

No description provided

 training workflow  

06 Jan 2023

split-workflow

Split workflow example

 training workflow  

06 Jan 2023

pipeline-workflow

Pipeline workflow example

 training workflow   example-workflow  pipeline 

06 Jan 2023

merge-workflow

Merge workflow example

 training workflow  

08 Nov 2022

variant-calling-pegasus-workflow

A Pegasus Workflow for "Automating a Variant Calling Workflow" from Data Carpentry Lesson "Data Wrangling and Processing for Genomics"

bioinformatics  genomics  workflow 

08 Mar 2022

mask-detection-workflow

Mask Detection and Classification with pre-trained FastRCNN model using PyTorch & Optuna

machine-learning  optuna  pytorch-cnn  transfer-learning 

11 Jan 2022

molecular-transformer-workflow

No description provided

12 Nov 2020

pegasus-fb-nlp

Example of a Facebook NLP pipeline

machine-learning  nlp 

10 Jul 2020

sra-search-pegasus-workflow

Pegasus workflow which downloads and aligns SRA data, using SRA Toolkit, Samtools and Bowtie2